Q: When playing with combined Trek decks, do things named the same count as each other?

A: Yes. If it says you need a Phaser, the Enterprise, a Computer, a Malfunction, a Transporter, Romulans, or Worf, then any deck’s version of that card will do, regardless of the image.

Also note that Holodecks are interchangeable with the Holosuite; similarly, the Runabout counts as a Shuttlecraft and vice versa.